Publications

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2023

Nguyen-Vo, T. H., Trinh, Q. H., Nguyen, L., Nguyen-Hoang, P. U., Rahardja, S., & Nguyen, B. P. (2023). i4mC-GRU: Identifying DNA N4-Methylcytosine Sites in Mouse Genomes using Bidirectional Gated Recurrent Unit and Sequence-embedded Features. Computational and Structural Biotechnology Journal. DOI: 10.1016/j.csbj.2023.05.014.

2022

Nguyen, Q. H., Ngo, H. H., Nguyen-Vo, T. H., Do, T. T., Rahardja, S., & Nguyen, B. P. (2023). eMIC-AntiKP: Estimating minimum inhibitory concentrations of antibiotics towards Klebsiella pneumoniae using deep learning. Computational and Structural Biotechnology Journal, 21, 751-757. DOI: 10.1016/j.csbj.2022.12.041.

Nguyen-Vo, T. H., Trinh, Q. H., Nguyen, L., Nguyen-Hoang, P. U., Rahardja, S., & Nguyen, B. P. (2022). iPromoter-Seqvec: identifying promoters using bidirectional long short-term memory and sequence-embedded features. BMC Genomics, 23(5), 1-12. DOI: 10.1186/s12864-022-08829-6.

Do, T. T., Nguyen‐Vo, T. H., Pham, H. T., Trinh, Q. H., & Nguyen, B. P. (2023). iNSP‐GCAAP: Identifying nonclassical secreted proteins using global composition of amino acid properties. Proteomics, 23(1), 2100134. DOI: 10.1002/pmic.202100134.

Truong, V. T., Nguyen, B. P., Nguyen-Vo, T. H., Mazur, W., Chung, E. S., Palmer, C., ... & Le, T. K. (2022). Application of machine learning in screening for congenital heart diseases using fetal echocardiography. The International Journal of Cardiovascular Imaging. DOI: 10.1007/s10554-022-02566-3.

Nguyen, L., Nguyen Vo, T. H., Trinh, Q. H., Nguyen, B. H., Nguyen-Hoang, P. U., Le, L., & Nguyen, B. P. (2022). iANP-EC: Identifying Anticancer Natural Products Using Ensemble Learning Incorporated with Evolutionary Computation. Journal of Chemical Information and Modeling. DOI: 10.1021/acs.jcim.1c00920. 

2021

Nguyen-Vo, T. H., Trinh, Q. H., Nguyen, L., Nguyen-Hoang, P. U., Nguyen, T. N., Nguyen, D. T., ... & Le, L. (2021). iCYP-MFE: Identifying Human Cytochrome P450 Inhibitors Using Multitask Learning and Molecular Fingerprint-Embedded Encoding. Journal of Chemical Information and Modeling. DOI: 10.1021/acs.jcim.1c00628.

Nguyen-Vo, T. H., Trinh, Q. H., Nguyen, L., Do, T. T., Chua, M. C. H., & Nguyen, B. P. (2021). Predicting Antimalarial Activity in Natural Products Using Pretrained Bidirectional Encoder Representations from Transformers. Journal of Chemical Information and Modeling. DOI: 10.1021/acs.jcim.1c00584. 

2020

Nguyen-Vo, T. H., Nguyen, L., Do, N., Le, P. H., Nguyen, T. N., Nguyen, B. P., & Le, L. (2020). Predicting Drug-Induced Liver Injury Using Convolutional Neural Network and Molecular Fingerprint-Embedded Features. ACS Omega, 5(39), 25432-25439. DOI: 10.1021/acsomega.0c03866.

Nguyen-Vo, T. H., Nguyen, L., Do, N., Nguyen, T. N., Trinh, K., Cao, H., & Le, L. (2019). Plant metabolite databases: from herbal medicines to modern drug discovery. Journal of Chemical Information and Modeling, 60(3), 1101-1110. DOI: 10.1021/acs.jcim.9b00826.

Le, T. K., Truong, V., Nguyen-Vo, T. H., Nguyen, B. P., Ngo, T. N., Bui, Q. V., ... & Chau, H. N. (2020). Application of Machine Learning in Screening of Congenital Heart Diseases Using Fetal Echocardiography. Journal of the American College of Cardiology, 75(11_Supplement_1), 648-648. Link.

2019

Nguyen-Vo, T. H., Nguyen, Q. H., Do, T. T., Nguyen, T. N., Rahardja, S., & Nguyen, B. P. (2019). iPseU-NCP: Identifying RNA pseudouridine sites using random forest and NCP-encoded features. BMC Genomics, 20(10), 1-11. DOI: 10.1186/s12864-019-6357-y.

Nguyen, B. P., Nguyen, Q. H., Doan-Ngoc, G. N., Nguyen-Vo, T. H., & Rahardja, S. (2019). iProDNA-CapsNet: identifying protein-DNA binding residues using capsule neural networks. BMC Bioinformatics, 20(23), 1-12. DOI: 10.1186/s12859-019-3295-2.

Nguyen, Q. H., Nguyen-Vo, T. H., Le, N. Q. K., Do, T. T., Rahardja, S., & Nguyen, B. P. (2019). iEnhancer-ECNN: identifying enhancers and their strength using ensembles of convolutional neural networks. BMC Genomics, 20(9), 1-10. DOI: 10.1186/s12864-019-6336-3.

2018

Nguyen-Vo, T. H., Le, T., Pham, D., Nguyen, T., Le, P., Nguyen, A., ... & Le, L. (2018). VIETHERB: a database for Vietnamese herbal species. Journal of Chemical Information and Modeling, 59(1), 1-9. DOI: 10.1021/acs.jcim.8b00399.

2016

Vo, T. H. N., Tran, N., Nguyen, D., & Le, L. (2016). An in silico study on antidiabetic activity of bioactive compounds in Euphorbia thymifolia Linn. SpringerPlus, 5(1), 1-13. DOI: 10.1186/s40064-016-2631-5.